Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129699g00001 GGGACATTGATTGCAGTAAAGCAACTTTCTTCTAAATCAAGGCAAGGGAACCGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCTTTACAACACCCATATCTTGTTAAACTCTATGGCTGTTGTGTGGAGGGAGATCAATTGTTGCTGATATATGAATACTTGGAAAACAATAGCCTTGCCCGTGCTTTATTTGGTCCAGAGGAAGAACAGATCAAATTAGATTGGTTAATAAGGCAGAAGATTTGTGTTGGTATTGCTAGTGGTTTGGCATTCCTTCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGATATCAAGGCCACTAATGTGTTGCTCGATAAAGATTTGGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGACGAGGAGGACAATACTCACATTAGCACTAAAATTGCTGGGACCTAG 435 0.4 GTLIAVKQLSSKSRQGNREFLNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEYLENNSLARALFGPEEEQIKLDWLIRQKICVGIASGLAFLHEESRLKVVHRDIKATNVLLDKDLDPKISDFGLAKLDEEDNTHISTKIAGT 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129699g00001 144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Trme129699g00001 144 SUPERFAMILY Protein kinase-like (PK-like) 1 144 IPR011009 -
Trme129699g00001 144 Gene3D Phosphorylase Kinase; domain 1 1 55 - -
Trme129699g00001 144 ProSiteProfiles Protein kinase domain profile. 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129699g00001 144 SMART serkin_6 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129699g00001 144 Gene3D Transferase(Phosphotransferase) domain 1 56 144 - -
Trme129699g00001 144 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 144 - -
Trme129699g00001 144 Pfam Protein tyrosine and serine/threonine kinase 4 137 IPR001245 GO:0004672|GO:0006468
Trme129699g00001 144 FunFam Os07g0541700 protein 55 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129699g00001 Trme-Chr129699 1 555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129699g00001 1 144 Receptor kinase-like Gene Family AT1G53420 81.944 1.01e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme129699g00001 PK_Tyr_Ser-Thr 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129699g00001 - - gmx:732563 265.003