Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129676g00001 GATAGAAACACGGTGTTCAAGGGTATTTCACATGGTGCATGTGACTATTTGGTGAAACCTGTTCAACTTGAAGTGCTCCAGAACATATGGCAACATGTAGTTCGAAAACAAACAACTGCTTCCAAGGATCAGAATAAGGCTTCCAATGAGGATAKKAACCCTAATATTTCCGGGGGAAATAGTCAAAACGTATTGGAGAACATTACTGAACAGAATAAAAACTTGGGTAAAAGAAGGAAGGACCAAGCTGACGAGGAAGAAAATGAAGAAGGTGAAGGGACTGGGGATGAGGATGACCCCTCATTGCAGAAGAAACCTCGTGTGGTTTGGTCTGTCGATCTGCATAGGAAATTTGTTATTGCGGTTAATCAACTTGGCTTGGAAAAGGCTGTTCCGAAGAAAATACTTG 409 0.4156 DRNTVFKGISHGACDYLVKPVQLEVLQNIWQHVVRKQTTASKDQNKASNEDXNPNISGGNSQNVLENITEQNKNLGKRRKDQADEEENEEGEGTGDEDDPSLQKKPRVVWSVDLHRKFVIAVNQLGLEKAVPKKIL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129676g00001 136 Coils Coil 65 85 - -
Trme129676g00001 136 ProSiteProfiles Response regulatory domain profile. 1 34 IPR001789 GO:0000160
Trme129676g00001 136 Gene3D - 1 105 - -
Trme129676g00001 136 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 136 IPR006447 GO:0003677
Trme129676g00001 136 SUPERFAMILY CheY-like 2 42 IPR011006 -
Trme129676g00001 136 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 129 IPR045279 GO:0009736
Trme129676g00001 136 MobiDBLite consensus disorder prediction 34 71 - -
Trme129676g00001 136 Gene3D - 106 136 - -
Trme129676g00001 136 MobiDBLite consensus disorder prediction 34 107 - -
Trme129676g00001 136 SUPERFAMILY Homeodomain-like 103 136 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129676g00001 Trme-Chr129676 1 534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129676g00001 2 136 Response Regulator Gene Family AT4G16110 43.046 1.49e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme129676g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129676g00001 K14491 - vvo:131594764 192.971