Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme129672g00001 | CCTTTAGATGTAATCAAAACTAGGTTACAGGTTCATGGGACTCCTGAGCTTGCTAATGGAAATGTTAAAGGTAGTCTTATAGTTGGTAGTNTGGGACAAATATATCAGAAGGAGGGGTTGCGTGGCATGTACCGCGGGCTAGCTCCCACTGTTCTGGCCTTACTTCCAAACTGGGCTGTGAGTTTACACTTCTTGTTACCTGCTTGTTGTCATTAA | 216 | 0.4398 | PLDVIKTRLQVHGTPELANGNVKGSLIVGSXGQIYQKEGLRGMYRGLAPTVLALLPNWAVSLHFLLPACCH | 71 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme129672g00001 | 71 | SUPERFAMILY | Mitochondrial carrier | 1 | 63 | IPR023395 | - | |
| Trme129672g00001 | 71 | Gene3D | Mitochondrial carrier domain | 1 | 65 | IPR023395 | - | |
| Trme129672g00001 | 71 | Pfam | Mitochondrial carrier protein | 1 | 62 | IPR018108 | - | |
| Trme129672g00001 | 71 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 1 | 64 | IPR044712 | GO:0006862|GO:0055085 | |
| Trme129672g00001 | 71 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 1 | 71 | IPR018108 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme129672g00001 | 1 | 60 | Chloroplast and Mitochondria Gene Families | AT2G47490 | 70.000 | 1.02e-27 | 99.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme129672g00001 | K15115 | - | vvi:100258843 | 108.612 |