Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129627g00001 ATGCTTCTTCGAGATAGTTTTTGCAAACATAATGTTATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCCAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAATATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGATAGACAG 282 0.3546 MLLRDSFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQ 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129627g00001 94 Pfam SNF2-related domain 8 91 IPR000330 GO:0005524|GO:0140658
Trme129627g00001 94 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 3 94 IPR044972 GO:0003677|GO:0016887|GO:0017025
Trme129627g00001 94 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 92 IPR027417 -
Trme129627g00001 94 Gene3D - 3 94 IPR038718 -
Trme129627g00001 94 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 87 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129627g00001 Trme-Chr129627 190 557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129627g00001 9 84 RAD5 or RAD16-like Gene Family AT1G11100 43.678 1.20e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme129627g00001 SNF2_N 2.8e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129627g00001 K15192 - gmx:100777977 188.348