Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12959g00001 ATGCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGGAACTACTGGCATTGGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTCTTGCCTGTTTACCTTCAATCATCTATAAGACGGGGAGTGACCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGACGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAACAACTGGTTGAAAATAAACAAG 279 0.4516 MQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLACLPSIIYKTGSDQHGSNDSCVICRVDYEDDESLTILSCKHLYHPECINNWLKINK 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12959g00001 93 FunFam E3 ubiquitin ligase BIG BROTHER-related 24 93 - -
Trme12959g00001 93 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 93 IPR013083 -
Trme12959g00001 93 Pfam Ring finger domain 56 92 IPR001841 -
Trme12959g00001 93 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 2 93 IPR043312 -
Trme12959g00001 93 SUPERFAMILY RING/U-box 49 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12959g00001 Trme-Chr12959 446 903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12959g00001 2 93 C3H Transcription Factor Family AT3G63530 50.526 4.83e-27 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12959g00001 K19045 - gmx:100787418 191.43