Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129551g00001 TCTGTTGACTTTTTGCAGAAACTCTGCAAGTGGCTTGTCCAGTTGCTGATGGCACTTGATTACTTACATGTAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTCGCTAAAATGTTGACATCTGACGATCTTGCTTCCTCAGTGAATTGTTGGGACTCCAAGTTATATGTGCCCGGAGCTTCTTGCTGA 240 0.4 SVDFLQKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVNCWDSKLYVPGASC 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129551g00001 79 Gene3D Transferase(Phosphotransferase) domain 1 5 78 - -
Trme129551g00001 79 SUPERFAMILY Protein kinase-like (PK-like) 8 63 IPR011009 -
Trme129551g00001 79 ProSitePatterns Serine/Threonine protein kinases active-site signature. 27 39 IPR008271 GO:0004672|GO:0006468
Trme129551g00001 79 ProSiteProfiles Protein kinase domain profile. 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129551g00001 79 Pfam Protein kinase domain 8 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129551g00001 79 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129551g00001 Trme-Chr129551 2 558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129551g00001 11 66 Core Cell Cycle Gene Families AT5G64960 41.071 1.79e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trme129551g00001 Pkinase 1.2e-16 CL0016