Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129418g00001 ATGAGGCATTTACCTAATCACCCTAACATCGTGTTGTTGAAGGATACCTATGAAGATGAGGATGATGTTCATCTTATCATGGAATTTTGTGAAGGTGGTGACCTTCTTGATTGCATCGTCTCTAGAGGAGATTACACTGAACACTCCGCAGCTTCTATCATTAAAAGGATTGTTCTAGTTGTTCAA 186 0.3925 MRHLPNHPNIVLLKDTYEDEDDVHLIMEFCEGGDLLDCIVSRGDYTEHSAASIIKRIVLVVQ 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129418g00001 62 Gene3D Transferase(Phosphotransferase) domain 1 1 61 - -
Trme129418g00001 62 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 62 - -
Trme129418g00001 62 ProSiteProfiles Protein kinase domain profile. 1 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129418g00001 62 Gene3D Phosphorylase Kinase; domain 1 12 29 - -
Trme129418g00001 62 Pfam Protein kinase domain 6 59 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129418g00001 62 SUPERFAMILY Protein kinase-like (PK-like) 1 60 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129418g00001 Trme-Chr129418 341 526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129418g00001 1 62 EF-hand Containing Proteins AT3G57530 64.516 1.32e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme129418g00001 Pkinase 3.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129418g00001 K13412 - qsa:O6P43_010150 94.7449