Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129399g00001 ATGAGACACTATGTTCACTGCTATGCATTGCATTGTTTAGATGAGGAAGTTTCCAATGAGCTGAGAAGGGGTTTCAAGGAAAGAGGCGAGAACGTTGGTGCGTGGAGGCAAGCTTGTTACAAGCCACTAGTGGCGATCGCTGCACGTCAAGGATGGGATATTGATGCAATATTCAATGCGCATCCGCGTCTTTCCATATGGTACGTGCCAACCAAACTCCGTCAGCTTTGTCATGCTGAGAGAAACGGTGCTGCTGCTTCTAGCTCCGTCTCTGTTGGAACGACCCACCTTCCTTTCTAA 300 0.4867 MRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNGAAASSSVSVGTTHLPF 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129399g00001 99 PANTHER PROTEIN LEAFY 1 98 IPR002910 GO:0003677|GO:0006355
Trme129399g00001 99 Gene3D Protein LEAFY 1 91 IPR038276 -
Trme129399g00001 99 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 1 85 IPR035209 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129399g00001 Trme-Chr129399 248 547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129399g00001 1 93 Orphan Transcription Factor Family AT5G61850 82.796 7.31e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Trme129399g00001 C_LFY_FLO 4.9e-52 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129399g00001 - - gmx:100798196 200.675