Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129371g00001 ATGGGTGAGAAAGAGTGGTATTTTTTTTGTGTGAGAGATAGAAAGTACCCTACTGGTTTGAGGACTAATAGAGCAACTGAAGCTGGATATTGGAAAGCAACAGGAAAAGATAAGGAGATTTATAGAGGAAAATCTCTTGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAGAAA 195 0.3692 MGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEK 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129371g00001 65 ProSiteProfiles NAC domain profile. 1 65 IPR003441 GO:0003677|GO:0006355
Trme129371g00001 65 Gene3D NAC domain 1 65 IPR036093 GO:0003677|GO:0006355
Trme129371g00001 65 SUPERFAMILY NAC domain 2 65 IPR036093 GO:0003677|GO:0006355
Trme129371g00001 65 Pfam No apical meristem (NAM) protein 2 64 IPR003441 GO:0003677|GO:0006355
Trme129371g00001 65 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129371g00001 Trme-Chr129371 1 195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129371g00001 1 65 NAC Transcription Factor Family AT5G61430 96.923 4.40e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme129371g00001 NAM 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129371g00001 - - cave:132175048 142.124