Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129370g00001 ATTGGTGATTTGGGTCTATCAAAGGTTAAGCAGAACACACTAGTGTCTGGAGGGGTACGAGGAACTTTACCTTGGATGGCACCTGAACTTCTTAGCGGGAAAAGCCATATGGTGTCAGAGAAGATCGATGTTTACTCTTTCGGGATAGTCATGTGGGAATTACTCACAGGGGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGATGTGCACGTTAGAGTATTGGTGCACTGA 240 0.4375 IGDLGLSKVKQNTLVSGGVRGTLPWMAPELLSGKSHMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIDVHVRVLVH 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129370g00001 79 SUPERFAMILY Protein kinase-like (PK-like) 1 76 IPR011009 -
Trme129370g00001 79 PANTHER SERINE-THREONINE PROTEIN KINASE 1 68 - -
Trme129370g00001 79 ProSiteProfiles Protein kinase domain profile. 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129370g00001 79 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
Trme129370g00001 79 Pfam Protein tyrosine and serine/threonine kinase 1 70 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129370g00001 Trme-Chr129370 160 577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129370g00001 1 70 MAP Kinase Kinase Kinase AT5G57610 95.714 3.85e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trme129370g00001 PK_Tyr_Ser-Thr 3.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129370g00001 - - tpra:123909448 144.05