Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129250g00001 GGTTTGGCAAGAATATTTGGAGGAAAAGAAACCGAGGCAAACACAGAGAGGGTTGTTGGGACTTATGGATACATGTCTCCTGAGTATGCATTGGATGGACAATTCTCTACAAAATCAGATGTTTTCAGCTTTGGTGTTGTCTTGCTCGAGATCATAAGTGGGAAAAAGAACACGGGATTCTTTCAAACAAAAGAAATTTCAAGCCTTTTGGGCTTGGATGCTATGGCGAGAGGAAAAGTTGCAAGATTTACTAGACCAATCTCTGTGCGATAA 273 0.4103 GLARIFGGKETEANTERVVGTYGYMSPEYALDGQFSTKSDVFSFGVVLLEIISGKKNTGFFQTKEISSLLGLDAMARGKVARFTRPISVR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129250g00001 90 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 71 - -
Trme129250g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129250g00001 90 Pfam Protein tyrosine and serine/threonine kinase 1 66 IPR001245 GO:0004672|GO:0006468
Trme129250g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 1 57 IPR011009 -
Trme129250g00001 90 Gene3D Transferase(Phosphotransferase) domain 1 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129250g00001 Trme-Chr129250 2 494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129250g00001 1 62 Receptor kinase-like Gene Family AT3G45860 74.194 1.11e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme129250g00001 PK_Tyr_Ser-Thr 3.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129250g00001 - - tpra:123882048 142.51