Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12921g00001 ATGAGAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGGGCTATAACTCGACCACCAAATCTTTCAATCGTTACTGAATTTCTTCCTAGAGGGAGTCTGTATAGATTAATTCATCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGAGGATGGCCCTGGATACTGCTCGAGGAATGAACTATTTGCACAACAGCACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAACCTTCTCGTTGACAAAAATTGGGTTGTAAAGGTATGTGATTTCGGCTTGTCTCGAATGAAGTACAATACGTTCCTTTCTTCTAGGTCAACTGCGGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTAA 393 0.4275 MRRLRHPNVVLFMGAITRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDTARGMNYLHNSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKYNTFLSSRSTAGTAEWMAPEVLRNELSDEK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12921g00001 130 ProSiteProfiles Protein kinase domain profile. 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12921g00001 130 Gene3D Transferase(Phosphotransferase) domain 1 1 130 - -
Trme12921g00001 130 SMART serkin_6 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12921g00001 130 Pfam Protein tyrosine and serine/threonine kinase 1 126 IPR001245 GO:0004672|GO:0006468
Trme12921g00001 130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 71 83 IPR008271 GO:0004672|GO:0006468
Trme12921g00001 130 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 125 - -
Trme12921g00001 130 SUPERFAMILY Protein kinase-like (PK-like) 1 128 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12921g00001 Trme-Chr12921 23 1419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12921g00001 1 130 MAP Kinase Kinase Kinase AT1G18160 90.000 1.94e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trme12921g00001 PK_Tyr_Ser-Thr 6.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12921g00001 - - ccaj:109799481 259.996