Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme129195g00001 | ATTTTTGACGGGCACAACGGTATATCAGCTGCTATTTATACAAAGGAAAACTTGCTTAATAATGTTTTGAGTGCAATGCCACAAGATATTAGCAGGGATGCATGGCTACAGGCCCTTCCTCGTGCTTTAGTTGTTGGTTTTGTGAAGACTGACACAGAGTTTCAGAAGAAGGGGGAAACTTCTGGGACGACGGCTACATTTGTTCTGGTTGATGGCTGGACTGTCACTGTTGCATCTGTTGGTGATTCCCGTTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGACCATAGACTGGAAGAGAATGTAGAAGAGAGGGAGCGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATATATTTGGGGGAAA | 386 | 0.4456 | IFDGHNGISAAIYTKENLLNNVLSAMPQDISRDAWLQALPRALVVGFVKTDTEFQKKGETSGTTATFVLVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGG | 128 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme129195g00001 | 128 | Pfam | Protein phosphatase 2C | 1 | 122 | IPR001932 | - | |
| Trme129195g00001 | 128 | CDD | PP2Cc | 1 | 103 | IPR001932 | - | |
| Trme129195g00001 | 128 | Gene3D | - | 1 | 128 | IPR036457 | - | |
| Trme129195g00001 | 128 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 128 | IPR001932 | - | |
| Trme129195g00001 | 128 | PANTHER | PROTEIN PHOSPHATASE | 1 | 122 | IPR015655 | GO:0004722|GO:0006470 | |
| Trme129195g00001 | 128 | SUPERFAMILY | PP2C-like | 1 | 120 | IPR036457 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme129195g00001 | Trme-Chr129195 | 138 | 600 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme129195g00001 | 1 | 128 | PP2C-type Phosphatase Gene Family | AT1G09160 | 86.719 | 1.29e-77 | 234 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme129195g00001 | - | - | gmx:100807886 | 229.18 |