Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129140g00001 ATGCACTTTTCAGCTTCTATTCCAATCTTCCACAGAGACATCAAACCAACCAACATACTCCTAGACAGTAACTATAGTGCCAAAGTGTCTGATTTTGGGACATCAAGATCAATACCACTAGATAAGACTCACCTAACCACATTTGTAGGTGGAACTTTTGGGTACATAGACCCTGAATATTTCCAGTCCAGTCAATTTACAGATAAGAGTGATGTATACAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACCGGTAGAAAGCCGATTTCATTCTATGATGAAGACGAGGGTCAGAATTTGATTGCACATTTCATTTCTGCGATGAAGGAGAACCAACTTTCTCAAATTATAGATGCCAGAGTGCAAAAGGAAGCAGGGAAAGATATCATTCTTACCATTTCGAATCTTACAATGAGATGCTTGAGACTAAATG 433 0.3903 MHFSASIPIFHRDIKPTNILLDSNYSAKVSDFGTSRSIPLDKTHLTTFVGGTFGYIDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPISFYDEDEGQNLIAHFISAMKENQLSQIIDARVQKEAGKDIILTISNLTMRCLRLN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129140g00001 144 SUPERFAMILY Protein kinase-like (PK-like) 6 144 IPR011009 -
Trme129140g00001 144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Trme129140g00001 144 Gene3D Transferase(Phosphotransferase) domain 1 1 144 - -
Trme129140g00001 144 ProSiteProfiles Protein kinase domain profile. 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129140g00001 144 Pfam Protein kinase domain 9 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129140g00001 144 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 144 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129140g00001 Trme-Chr129140 42 474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129140g00001 1 141 Receptor kinase-like Gene Family AT1G16150 60.993 5.71e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trme129140g00001 Pkinase 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129140g00001 - - gmx:100792803 250.751