Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129054g00001 ATGAAAATTTGTTATCTGATAATAGTGGATCTTGTGAAGGTTACTGACAATTTTTCGGCTGAAAATTTCATTGGAAGAGGCGGGTTTGGTTCGGTTTACAAGGGGGTTTTACCTGATGGGACTGTTGTTGCGGTTAAAAGGATTGAAGAGTCTGATTATCAAGGCGATGTTGAGTTTTACAGAGAGGTGGGGATTGTTAGTAGCTTGAAGCACCGTAATTTGGTGCCGCTAAGAGGGTGTTGTGTGGTTGGTGAGGATGTGAATCCTGAGTACATTGG 278 0.4245 MKICYLIIVDLVKVTDNFSAENFIGRGGFGSVYKGVLPDGTVVAVKRIEESDYQGDVEFYREVGIVSSLKHRNLVPLRGCCVVGEDVNPEYIG 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129054g00001 93 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 3 88 - -
Trme129054g00001 93 ProSitePatterns Protein kinases ATP-binding region signature. 24 46 IPR017441 GO:0005524
Trme129054g00001 93 SUPERFAMILY Protein kinase-like (PK-like) 6 85 IPR011009 -
Trme129054g00001 93 Gene3D Phosphorylase Kinase; domain 1 2 87 - -
Trme129054g00001 93 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 84 - -
Trme129054g00001 93 Pfam Protein kinase domain 20 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129054g00001 93 ProSiteProfiles Protein kinase domain profile. 18 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129054g00001 Trme-Chr129054 1 349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129054g00001 8 86 Receptor kinase-like Gene Family AT1G11050 68.354 4.97e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trme129054g00001 Pkinase 9.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129054g00001 - - lja:Lj4g3v2693570.1 135.961