Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129022g00001 ATGTTTGGAAGAGTCTTGCAAGGTGTAGATTCTTCTAAAAGAAATGCATTGATCATCAAGCAAATAATGCGCCAAATCATTACATCTCTTAAGAAAATTCATGACACTGGCATTGTTCATAGGGATGTAAAGCCTTCCAACTTGGTTGTTACAAAAAAAGGGCAGATCAAACTCATTGATTTTGGTGCAGCAACAGACCTTAGAATTGGAAAGAATTTTGCTCCTAATTATACTCCTTTGGATCCTGATTACTGTCCCCCTGAACTATATGTGCTACCACAAGAAACACAAAGTCTTCCTCCAGAGCCAATTGCAGC 317 0.3849 MFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPSNLVVTKKGQIKLIDFGAATDLRIGKNFAPNYTPLDPDYCPPELYVLPQETQSLPPEPIAA 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129022g00001 106 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 106 - -
Trme129022g00001 106 Gene3D Transferase(Phosphotransferase) domain 1 9 105 - -
Trme129022g00001 106 ProSiteProfiles Protein kinase domain profile. 1 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme129022g00001 106 SUPERFAMILY Protein kinase-like (PK-like) 15 90 IPR011009 -
Trme129022g00001 106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 38 50 IPR008271 GO:0004672|GO:0006468
Trme129022g00001 106 Pfam Protein kinase domain 18 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129022g00001 Trme-Chr129022 1 317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129022g00001 18 88 MAP Kinase Kinase Gene Family AT1G32320 36.620 3.60e-10 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Trme129022g00001 Pkinase 5.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129022g00001 - - gmx:100795624 197.208