Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128879g00001 ATGAAGAAAGTAACAACGAAAGTGGATGTGTTCAGCTTTGGTATCATAGTAATGGAATTTCTAACAAGAAAAAGGCCAACAGGGCTCTCAGAAGAGGATAGCTCGTTAATCAGTTTGCGTGATGTAGTGGCAAAAGCCGTTGCAAATGGAACGGAACAGATTATCAATATTGTGGACCCTGAATTGATCACAAAAGACAATGGAGAAGTGTTGGAAGAGCTCTTTAAACTATCATTGTGCTGCACCTTCTCTGATCCTGAACATCGACCTAATATGAATGAAGTTTTATCTGCACTTATGAAGCTTAAGACAGCAAGATAG 321 0.3925 MKKVTTKVDVFSFGIIVMEFLTRKRPTGLSEEDSSLISLRDVVAKAVANGTEQIINIVDPELITKDNGEVLEELFKLSLCCTFSDPEHRPNMNEVLSALMKLKTAR 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128879g00001 106 SUPERFAMILY Protein kinase-like (PK-like) 3 97 IPR011009 -
Trme128879g00001 106 Pfam Protein tyrosine and serine/threonine kinase 2 99 IPR001245 GO:0004672|GO:0006468
Trme128879g00001 106 Gene3D Transferase(Phosphotransferase) domain 1 1 106 - -
Trme128879g00001 106 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme128879g00001 106 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128879g00001 Trme-Chr128879 243 563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128879g00001 1 103 Receptor kinase-like Gene Family AT5G46330 49.533 1.01e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme128879g00001 PK_Tyr_Ser-Thr 4.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128879g00001 K13420 - gmx:100788119 155.992