Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12882g00001 ATGGCAGAGCCATCACTGCCACCAGGTTTTCGTTTTCGTCCAACCGATGAAGAACTGATTGGATACTATCTGAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGATGTTATCCCAATGATTGATTTTTACAAATTTGATCCATGGGAGTTACCTGTGCGTGTGAGTGTTGTAAACTCTGAGGTACCAAGTTCGATGACTATTCATTAA 210 0.4 MAEPSLPPGFRFRPTDEELIGYYLKRKVEGLEIELDVIPMIDFYKFDPWELPVRVSVVNSEVPSSMTIH 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12882g00001 69 ProSiteProfiles NAC domain profile. 6 69 IPR003441 GO:0003677|GO:0006355
Trme12882g00001 69 SUPERFAMILY NAC domain 3 55 IPR036093 GO:0003677|GO:0006355
Trme12882g00001 69 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 57 - -
Trme12882g00001 69 Pfam No apical meristem (NAM) protein 7 55 IPR003441 GO:0003677|GO:0006355
Trme12882g00001 69 Gene3D NAC domain 15 64 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12882g00001 Trme-Chr12882 606 904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12882g00001 1 62 NAC Transcription Factor Family AT4G17980 69.355 4.03e-27 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme12882g00001 NAM 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12882g00001 - - mtr:11415472 101.293