Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128673g00001 ATGGTGCAAGGAACTCTCGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACCGAGAAAAGTGATGTTTATAGCTTTGGCGTAGTTCTTGCAGAGCTTTTAACAGGAGACAAACCTCTTACTTTTAATCGCCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTATCTTGTTTAAAACAAGATAAAATCTTTGAAGCTATTCAAGTTGGAGTTTTGAGTGATGATAACAAGAAGGAGATTAATGAGGTTGCTATTCTTGCTGCAAGGTGTATGAGACTAAGAGGTGATGAAAGACCAAGCATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGGTTAATGGAGAAGCATCCTTGGAATGAT 372 0.3817 MVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGVLSDDNKKEINEVAILAARCMRLRGDERPSMKEVAMELDGIRLMEKHPWND 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128673g00001 124 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 115 IPR045274 GO:0007166
Trme128673g00001 124 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme128673g00001 124 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Trme128673g00001 124 Pfam Protein tyrosine and serine/threonine kinase 7 111 IPR001245 GO:0004672|GO:0006468
Trme128673g00001 124 SUPERFAMILY Protein kinase-like (PK-like) 2 113 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128673g00001 Trme-Chr128673 1 372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128673g00001 1 124 Receptor kinase-like Gene Family AT1G21240 56.800 4.34e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trme128673g00001 PK_Tyr_Ser-Thr 1.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128673g00001 - - tpra:123893257 217.624