Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128664g00001 ATGGTTATTNNNNNNNNNNTNNNNNNNNNNCAGGATGGGGTTGATTTGCTTGTGGACTCTAGGGATTGGGGGTTAGCTCATGATACAGTGAATTGTGTCATGAACGGAGAAAGATGGAGTGGTCAATTCCTAGTCAAGAATAAGAAAGGAGAAAGCTTTTTAGCTGTAACAACCAATACTCCTTTTTATGATGATGGAAGCTTAGTTGGGATTATCTCTGTGTCGAGTGATTCACGGCCGTTTCTTGAAATGAAGGCTCCATTTTATGGTGTAAAGAATGCTGAATCAGATTATGGTTCTATGCGTCGTAGCA 313 0.3802 MVIXXXXXXXQDGVDLLVDSRDWGLAHDTVNCVMNGERWSGQFLVKNKKGESFLAVTTNTPFYDDGSLVGIISVSSDSRPFLEMKAPFYGVKNAESDYGSMRRS 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128664g00001 104 Gene3D PAS domain 10 80 - -
Trme128664g00001 104 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 77 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128664g00001 Trme-Chr128664 8 320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128664g00001 11 100 MAP Kinase Kinase Kinase AT3G06640 43.956 1.08e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128664g00001 - - pvu:PHAVU_003G114400g 131.339