Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128629g00001 GAGTTGGAGAAGAGTCTACTGGCATTGCACCAAGTGTTCCTCGACATGACAGTATTGGTACATTTTCAAGGTGAGCAATTGGATGATATTGAGAGCCGTGTTGCGAGGGTGAGCACGGTTTTGTACGCTGGATCTAAGCAGTTACGTATTGCAAGGAAGCACCATAAAAACACAAGAAAATGGATCTGTTATTGTATTATTCTTCTTGTGATCATCGTCTTGTTTGTGGTTCTATTCACTGTGAAACCGTGGCAACATAATGATAGTGTTTGTCTACTTAACCTTAGGGATTAA 294 0.4082 ELEKSLLALHQVFLDMTVLVHFQGEQLDDIESRVARVSTVLYAGSKQLRIARKHHKNTRKWICYCIILLVIIVLFVVLFTVKPWQHNDSVCLLNLRD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128629g00001 97 FunFam Syntaxin 132 1 82 - -
Trme128629g00001 97 Pfam SNARE domain 25 77 IPR000727 -
Trme128629g00001 97 Gene3D - 1 82 - -
Trme128629g00001 97 SUPERFAMILY SNARE fusion complex 1 56 - -
Trme128629g00001 97 PANTHER SYNTAXIN 1 72 IPR045242 -
Trme128629g00001 97 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1 51 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128629g00001 Trme-Chr128629 2 295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128629g00001 1 87 SNARE and Associated Proteins AT3G52400 57.471 2.05e-23 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128629g00001 K08486 - gmx:100809258 111.694