Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12858g00001 CAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTTTGCATCAGGTTATAAGGCCCTTCATACTAAGAAGGAAAAAGGCTGAGGTAGAGAAGTTTCTTCCCGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACTGACGTGGGCAGAGTTGGGTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCATACCTCTTTGTGGGAAACTATGATATATATAGTCGTAAGGAGGAGATCGTCAGAGCATCGGGGAAATTTGAACTTCTTGACCGCTTGCTTCCCAAACTTCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACCAAAACTGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCCGACTCTCCATACTTTATGTTTCTCTTAAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAATCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAGAAAGAAGTTAGAGTTTTTGTGTTGGTTACTGTGGGATCAATTGAAGAGGTAATTTTAGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACGTCAACAG 859 0.4075 QNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYSRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVTVGSIEEVILERAKQKMGIDAKVIQAGLFNTTST 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12858g00001 286 Pfam Helicase conserved C-terminal domain 128 241 IPR001650 -
Trme12858g00001 286 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 131 286 IPR001650 -
Trme12858g00001 286 PANTHER SNF2/RAD54 HELICASE FAMILY 1 279 - -
Trme12858g00001 286 Gene3D - 48 286 IPR027417 -
Trme12858g00001 286 Pfam SNF2-related domain 1 108 IPR000330 GO:0005524|GO:0140658
Trme12858g00001 286 FunFam Probable ATP-dependent DNA helicase CHR12 48 286 - -
Trme12858g00001 286 SMART helicmild6 157 241 IPR001650 -
Trme12858g00001 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 280 IPR027417 -
Trme12858g00001 286 CDD SF2_C_SNF 119 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12858g00001 Trme-Chr12858 104 1547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12858g00001 126 269 RAD5 or RAD16-like Gene Family AT5G22750 38.356 1.01e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme12858g00001 Helicase_C 8.9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12858g00001 - - pvu:PHAVU_007G054000g 551.977