Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128557g00001 ATTTTGATCTATATCCTGTTGAATTTTCAGGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGTACAATATAACCAGACAGACTGGTAGTGTACAGGGATCGCCTGGTCCCGGTCGTACAAAGAAGATTTTTGTTGGAGGCCTACCGTCAACAATCACCGAAAGTGATTTTAAGATGTATTTTGATCAATTCGGTACAATTACTGATGTTGTAGTTATGTATGATCATAATACACAAAGGCCAAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCGGTCGATAGAGTTCTTTACAAAACATTTCATGAACTCAACGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCGAAAGAACTTTCACCTGGTCCCACCCGAAGCCCATTGATAGGAGGATATAACTATAGTTTGAACAGTAGATCTAGTAGCTACCTAAACAATTATGGTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGAATGGATGGTAGGTTTAGTCCACTTACTGGTGGCAGAACCGGTTTTACCCCTTTCGGAAACACCGGTTATGGAATGGGGATGAACTTGGATTCGGGATTGAGCCCAA 601 0.4143 ILIYILLNFQVEAKKAVPRDDQYNITRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGGYNYSLNSRSSSYLNNYGQGYSMSPIGGYGVRMDGRFSPLTGGRTGFTPFGNTGYGMGMNLDSGLSP 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128557g00001 200 Gene3D - 41 121 IPR012677 -
Trme128557g00001 200 CDD RRM2_Hrp1p 43 120 - -
Trme128557g00001 200 SUPERFAMILY RNA-binding domain, RBD 33 148 IPR035979 GO:0003676
Trme128557g00001 200 SMART rrm1_1 43 115 IPR000504 GO:0003723
Trme128557g00001 200 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 194 - -
Trme128557g00001 200 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 126 - -
Trme128557g00001 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 119 IPR000504 GO:0003723
Trme128557g00001 200 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128557g00001 Trme-Chr128557 1 601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128557g00001 41 118 Eukaryotic Initiation Factors Gene Family AT1G49760 32.911 1.77e-07 48.9