Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128417g00001 ATGCTTAGCCGCTTGCACCATAGAAATTTAGTTAAATTGATAGGTATATGCATAGAGAAACAAACTCGTTGCCTAGTGTATGAGCTTGTCCCTAATGGAAGCGTGGAATCCCACTTGCATGGTGCTGACAAGGAAAGTGATCCATTGGATTGGAATTCCCGGATGAAGATTGCTCTTGGTGCAGCTCGAGGATTGGCTTATTTGCATGAAGATTCCAATCCATATGTCATACACCGGGACTTCAAGTCCAGTAACATCTTGTTGGAATATGATTTTACAGCGAAGGTTTCGGATTTTGGATTGGCTAGAACAGCACTGGAAGAGGGAAACAAACACATCTCCACACATGTCATGG 355 0.431 MLSRLHHRNLVKLIGICIEKQTRCLVYELVPNGSVESHLHGADKESDPLDWNSRMKIALGAARGLAYLHEDSNPYVIHRDFKSSNILLEYDFTAKVSDFGLARTALEEGNKHISTHVM 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128417g00001 118 Pfam Protein tyrosine and serine/threonine kinase 1 111 IPR001245 GO:0004672|GO:0006468
Trme128417g00001 118 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme128417g00001 118 SMART tyrkin_6 1 117 IPR020635 GO:0004713|GO:0006468
Trme128417g00001 118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Trme128417g00001 118 PANTHER OS01G0750732 PROTEIN 1 118 - -
Trme128417g00001 118 FunFam Protein kinase superfamily protein 30 104 - -
Trme128417g00001 118 SUPERFAMILY Protein kinase-like (PK-like) 2 112 IPR011009 -
Trme128417g00001 118 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128417g00001 Trme-Chr128417 93 551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128417g00001 1 118 Receptor kinase-like Gene Family AT5G56890 81.513 2.61e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme128417g00001 PK_Tyr_Ser-Thr 2.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128417g00001 - - gmx:100814040 228.409