Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12830g00001 GAAAATGCGGATGACAATCAGCTCAGCAATACAGCAAACGAGTGGCCTGAAAACAGTTGGGCAAATGAGGATGGGGAAAACCCTCGTCTGCAAGAAGCTTCTGAAGTGTGGCAAGAGGATAGTGGCTTCCAAGAGGCCGTGGAAAATTGGTTGGGAGGACCTTCTAACCATGAAACTGCTCCAGGTGGTAGAGTTCGTAGTATTTATTTTCCTGATGATGACAATGTATACAGTGTTGAACTCAGGGAACTTCATAGTAGGAGACGTGTCTCTAATCTTCTCGGAAGTAGTTTCCGTGAGAATCTTGACCAATTGATACAATCATATGTCGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGAAGAAGCAAGCCCTTTTGCTGCCTCACTAGAACAGAACCTCGAGCAGCAGAGTAGAGATCATATTGTTGATCAGGAGGGCACTATCAATAGTCCACTTGGCTTGCCATCTTTGCCTAGACCTCCTACTCCGCCTCTATGGGATCAGCATCCTCATGGTGATAACTGGCCACAAAATGATGATTTGGAGATTATCAATGACTTGAGACTTGACATGGCTAGATTACAGCAAAGGATGAATACTATGCAGAAGATGCTCGAAGCATGTATGGATATGCAGCTTGAGCTTCAGCGCTCAATAAAACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATTAGGAATACATGACTGCGATTCACCAGATGATATTTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGATAGCAATATTGATTCTTTGTTGTACAGATGCGGGCACTTGTGCACATGCTCAAAATGTGCCAATGAGTTGCTTCAGAATAGAAGGAATTGCCCAATGTGTCAAGCCCCTGTCGTGGAGGTCATACGTACTTATTCTATACTATAA 936 0.437 ENADDNQLSNTANEWPENSWANEDGENPRLQEASEVWQEDSGFQEAVENWLGGPSNHETAPGGRVRSIYFPDDDNVYSVELRELHSRRRVSNLLGSSFRENLDQLIQSYVERQGHANMEWDMEEASPFAASLEQNLEQQSRDHIVDQEGTINSPLGLPSLPRPPTPPLWDQHPHGDNWPQNDDLEIINDLRLDMARLQQRMNTMQKMLEACMDMQLELQRSIKQEVSAALNRSAGSLGIHDCDSPDDISKWECVRKGLCCICCDSNIDSLLYRCGHLCTCSKCANELLQNRRNCPMCQAPVVEVIRTYSIL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12830g00001 311 Coils Coil 187 214 - -
Trme12830g00001 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 309 IPR013083 -
Trme12830g00001 311 Pfam Zinc finger, C3HC4 type (RING finger) 256 303 - -
Trme12830g00001 311 SUPERFAMILY RING/U-box 258 305 - -
Trme12830g00001 311 MobiDBLite consensus disorder prediction 1 20 - -
Trme12830g00001 311 CDD mRING-HC-C3HC5_NEU1 259 308 - -
Trme12830g00001 311 ProSiteProfiles Zinc finger RING-type profile. 259 298 IPR001841 -
Trme12830g00001 311 MobiDBLite consensus disorder prediction 1 41 - -
Trme12830g00001 311 MobiDBLite consensus disorder prediction 149 180 - -
Trme12830g00001 311 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12830g00001 Trme-Chr12830 2 1510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12830g00001 259 305 C3H Transcription Factor Family AT3G06140 40.426 2.90e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12830g00001 - - gmx:100801329 514.998