Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128294g00001 ATGTTTTTGCAGGCTTGTAAATTGAAATTAGGGGATATTAATGGAGCATTGTTGGACACAGAATTCGCATTGCGTGAAGGTAATAACAATGCCAAAGCTTTGTTCCGCCAAGGACAGGCATACATGGTACTCAATGACATCGATAATGCAGTTGAAAGCTTTAAAAAGGCACTGACATTGGAGCCAAATGATG 193 0.399 MFLQACKLKLGDINGALLDTEFALREGNNNAKALFRQGQAYMVLNDIDNAVESFKKALTLEPND 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128294g00001 64 ProSiteProfiles TPR repeat profile. 31 64 IPR019734 GO:0005515
Trme128294g00001 64 Gene3D Tetratricopeptide repeat domain 3 64 IPR011990 GO:0005515
Trme128294g00001 64 SMART tpr_5 31 64 IPR019734 GO:0005515
Trme128294g00001 64 ProSiteProfiles TPR repeat region circular profile. 31 64 - -
Trme128294g00001 64 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 3 64 IPR039663 -
Trme128294g00001 64 Pfam Tetratricopeptide repeat 31 64 IPR001440 GO:0005515
Trme128294g00001 64 SUPERFAMILY TPR-like 5 64 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128294g00001 Trme-Chr128294 123 449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128294g00001 5 64 Calmodulin-binding Proteins AT3G25230 46.667 1.08e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128294g00001 K05864 - qsu:112010535 106.686