Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12822g00001 TCAAGTGGTGATGCTTTGGTAGAAGAGCTGAAACGAGTGAGTGCAGAAAACAAGAAGTTGACAGGAATGTTGACAGAGATGTGTGAGAATTACAACACATTGAGAAACAATTTGATGGAATATATGAGGAAGTATCCTGATAAAGAGTCAAGTCCATCAAAGAAAAGAAAATCTGATGAAATAAGCAGCAGTAACAATAATCTAATGGGAGGAGGAGAAGGAGGAGGAGTTAATGGAAACAACTCTGAGAGTAGTTCAAGTGATGAAGATCAATCATGCAAGAAACCAATGGAATTAGAAACCTGCATTAAGGCAAAAGTTTCAAGAGTTTATTACAAACAAGAATCATCTGATTCAAGCCTTATTGTGAAAGATGGATATCAATGGAGAAAATATGGACAAAAGGTGACAAGGGATAATCCTTCTCCAAGAGCATACTTCAAATGTTCATTTGCTCCAAGCTGCACAGTGAAGAAGAAAGTGCAAAGAAGTGTGGAAGATCCATCAGTAGTTGTTGCAACATATGAAGGAGAACACAATCATCCTCATCCTTCTCAAATGGAGTCAACATCATCAGGCACAAACAATCGTTGTAGGAATCCAATAAGTTCAGCAGTGCCTTCTTCTGCACCAAGTACAGTTACCATTGATTGGACAAAATCTAAGTGCAGCAATGAATCTTCTTCTAAGAAAATGATGATAAATAATCCCAAAATGGAAGTACCTCAGATTTTGGTGGAACAAATGGCTACTTCATTGACCAAGGATCTTAACTTCAGAGCAGCACTAGCTGCTGCTATATCAGGAAAAATGTTGCATCAGAGTTAA 828 0.378 SSGDALVEELKRVSAENKKLTGMLTEMCENYNTLRNNLMEYMRKYPDKESSPSKKRKSDEISSSNNNLMGGGEGGGVNGNNSESSSSDEDQSCKKPMELETCIKAKVSRVYYKQESSDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCTVKKKVQRSVEDPSVVVATYEGEHNHPHPSQMESTSSGTNNRCRNPISSAVPSSAPSTVTIDWTKSKCSNESSSKKMMINNPKMEVPQILVEQMATSLTKDLNFRAALAAAISGKMLHQS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12822g00001 275 Gene3D WRKY domain 106 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme12822g00001 275 MobiDBLite consensus disorder prediction 177 196 - -
Trme12822g00001 275 MobiDBLite consensus disorder prediction 42 93 - -
Trme12822g00001 275 MobiDBLite consensus disorder prediction 42 61 - -
Trme12822g00001 275 Coils Coil 24 44 - -
Trme12822g00001 275 FunFam WRKY transcription factor 40 108 185 - -
Trme12822g00001 275 Coils Coil 272 275 - -
Trme12822g00001 275 SMART WRKY_cls 123 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme12822g00001 275 ProSiteProfiles WRKY domain profile. 118 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme12822g00001 275 Pfam WRKY DNA -binding domain 124 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme12822g00001 275 SUPERFAMILY WRKY DNA-binding domain 120 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme12822g00001 275 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 271 IPR044810 GO:0003700
Trme12822g00001 275 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12822g00001 Trme-Chr12822 259 1183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12822g00001 5 274 WRKY Transcription Factor Family AT1G80840 57.801 1.36e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme12822g00001 WRKY 2.4e-23 CL0274