Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12816g00001 ATGGCTGATGTCAGAGAAGAATGGGGGAGACATGGAAGGATGCATTTAAAGAAAAAGCTTTATTCTGATCTTTTGGGAGAACCAGATTTGAATATTGACAGACCACATGGATTGCCCATTTCTGTTGAGTGGAGACTTCGTCGTATGAAGGTTCTTGTTGTTCTTGACGATGTTAGTGATGAAGAGCAATTAGAAATTTTAATTGGATCTCGAACACTTGATTGGTTTGGAAGAGGCAGTAGAATCATCATAACTACAAGAGATAAGCAAGTACTTGCCAAAAGGGTTGATGATAATGATGTATACAAGCTTAAGCCATTGGATTTTGATGACTCTTTTCAGCTTTTCATATTGACAGCCTTTGGACAAAACCATGCTAAAATGGACACTGAGTGTCATCAGTTTTTTTCTTACCATAAGTATTTTCTTCAGTTTTTTTTGAGCAAAATGATCAATTATACCGAAGGTATTCCTTTAGTTGTTAAAGAACTAGGTCATTTTATTGGTGGAAAATATAGAAAGACATGGAAAAGTGAATGTGAGAAGCTAACAAGAGTGCCGTTGAAAAATGTCCATGATGCTATTGGATTGAGTTGTAATGATCTCAATCGTGTTGAGAAGGAGGCGTGGGATTTTGCATTAATGCAAATGAGATTTGACCACATACGACTGCTATTGAATGTTGACAACAAACAACTTTTGTGCATTGATATCAAACGACATTTCTGCTTCCCTACCAACCAACTTTTCCGCTTCGACAGGAATTATTCTCTGTTTGCTGCATTAATAGAACATGGGATGAGTGTGTTCGATGATATGCATAAGCCCAAACGTTGCTCAAAAAGAGTTATCGGATTTGGCAATCAAACTTCATATGTGGAATCATTCTTATCGACAGATTCAGAAGATGCTCCTGGTATAGGGAAAACAACTATTGTAGAGGGAGTATATACACGGATATGTAGCTTCAATATGAGTTATTCTTTTGATTTATCAATAGAACAACGCCTGAGTGTGTTCGATGATATGCATAAGCACAAACCGAACTTAAAAAGAGGACTTATCGGATTTGGCAATCAAATTTCACATGTGGAATCATTGTTAATGTCAGATTCAAAAGATGTTCGTGCCATTGGCATTTGGGGTATGGCTGGTATGGGGAAGACAACTATTGTAATGGAAGTATATAGAAGGCTATATTCTGAATATGACAGTTGTTGCTTTATGGCTAATGTTAGAGAAGAATGGAGGATTCATGGAAGGATGTTTTTAAAGAAAGAGCTTTATTCTATTCTATTAAGAAAAGAAAATTTGAATATTGAAAGACCACATGGATTGCCCTATTTTGTTGAGAGGAGACTTCGACGTATGAAGGTTCTTGTTGTTCTTGACGATGTTAGTGATGAAGAGC 1411 0.3657 MADVREEWGRHGRMHLKKKLYSDLLGEPDLNIDRPHGLPISVEWRLRRMKVLVVLDDVSDEEQLEILIGSRTLDWFGRGSRIIITTRDKQVLAKRVDDNDVYKLKPLDFDDSFQLFILTAFGQNHAKMDTECHQFFSYHKYFLQFFLSKMINYTEGIPLVVKELGHFIGGKYRKTWKSECEKLTRVPLKNVHDAIGLSCNDLNRVEKEAWDFALMQMRFDHIRLLLNVDNKQLLCIDIKRHFCFPTNQLFRFDRNYSLFAALIEHGMSVFDDMHKPKRCSKRVIGFGNQTSYVESFLSTDSEDAPGIGKTTIVEGVYTRICSFNMSYSFDLSIEQRLSVFDDMHKHKPNLKRGLIGFGNQISHVESLLMSDSKDVRAIGIWGMAGMGKTTIVMEVYRRLYSEYDSCCFMANVREEWRIHGRMFLKKELYSILLRKENLNIERPHGLPYFVERRLRRMKVLVVLDDVSDEE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12816g00001 470 Gene3D - 340 470 IPR027417 -
Trme12816g00001 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 469 IPR027417 -
Trme12816g00001 470 PRINTS Disease resistance protein signature 377 392 - -
Trme12816g00001 470 PRINTS Disease resistance protein signature 453 467 - -
Trme12816g00001 470 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 337 469 IPR044974 GO:0006952
Trme12816g00001 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 208 IPR027417 -
Trme12816g00001 470 Gene3D - 5 100 IPR027417 -
Trme12816g00001 470 Pfam NB-ARC domain 46 189 IPR002182 GO:0043531
Trme12816g00001 470 Pfam NB-ARC domain 363 470 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12816g00001 Trme-Chr12816 1 1514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12816g00001 351 468 WRKY Transcription Factor Family AT4G12020 36.441 2.04e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12816g00001 - - tpra:123883108 434.491