Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128087g00001 ATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGATTAAGCTTTTTCCTTTGAGTGGAAATGGAAATGGAAATGGAAATGATGGTCAAGATTATTATGGCAATGATATTGTTGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGATTACGCGGCTGATCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCACGGCGAGACGTGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTATTGCCGGGGATTCAATTGTGTTTTTGAGGGCAGAAAACGGTGATCTTTGTGTTGGGATTCGTCGAGCGAAAAAGGGTATCGGTGGTGGACATGAGGATCCTTCAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGATGAGAAACATTAACGACAATAACAGAAA 572 0.4126 MADPETDEVYAKIKLFPLSGNGNGNGNDGQDYYGNDIVENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGENFPLPWFTQNENQMMRNINDNNR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128087g00001 190 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 150 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme128087g00001 190 SUPERFAMILY DNA-binding pseudobarrel domain 36 181 IPR015300 -
Trme128087g00001 190 Pfam B3 DNA binding domain 47 148 IPR003340 GO:0003677
Trme128087g00001 190 ProSiteProfiles B3 DNA-binding domain profile. 47 149 IPR003340 GO:0003677
Trme128087g00001 190 Gene3D - 45 149 IPR015300 -
Trme128087g00001 190 CDD B3_DNA 46 147 IPR003340 GO:0003677
Trme128087g00001 190 SMART B3_2 47 149 IPR003340 GO:0003677
Trme128087g00001 190 FunFam Auxin response factor 45 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128087g00001 Trme-Chr128087 32 603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128087g00001 1 166 B3 DNA Binding Superfamily AT4G30080 71.856 1.11e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme128087g00001 B3 3.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128087g00001 - - sly:101246373 287.73