Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme128073g00001 ATGGAAAAAAATGGGTGTGTGAAATTCNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGGCTTGGAACTTACCCTACACCTGAAATGGCAGCTATAGCACATGATATAGCTGTCCTAGCAATTAAGGGCACTTCAGCAATATTCAATTTTCCTAATTCTATTTCTCTTCTTCCTATTTTGAAATCAACTTCAGCTAAAGATATAAGAGAAGCTGCAAAGACTTTTACAAACACTAGAGATGAGACTAAGTCTTGTTTGGTGGAAT 265 0.3208 MEKNGCVKFXXXXXXXXXXWLGTYPTPEMAAIAHDIAVLAIKGTSAIFNFPNSISLLPILKSTSAKDIREAAKTFTNTRDETKSCLVE 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme128073g00001 88 ProSiteProfiles AP2/ERF domain profile. 1 51 IPR001471 GO:0003700|GO:0006355
Trme128073g00001 88 SMART rav1_2 1 57 IPR001471 GO:0003700|GO:0006355
Trme128073g00001 88 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 74 - -
Trme128073g00001 88 SUPERFAMILY DNA-binding domain 17 53 IPR016177 GO:0003677
Trme128073g00001 88 Gene3D AP2/ERF domain 3 53 IPR036955 GO:0003700|GO:0006355
Trme128073g00001 88 CDD AP2 20 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme128073g00001 Trme-Chr128073 149 413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme128073g00001 20 72 AP2-EREBP Transcription Factor Family AT4G32800 60.377 3.37e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme128073g00001 - - gmx:100803317 93.9745