Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12796g00001 CCAAGTAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGTATAGCAAGACTCGTCTCGGCCATTGGTGGTACCTCACATAAGAATACCAGTACAATTGGAATAAAAGGAACCGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTGCTGAAGTGTCCAAATTTGGTGATATGTATAGCTTTGGAATCCTTGTGTTGGAAATGCTTACCGGTAGAAGACCCACGGATGAATTTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGTAAATTCATTTCCTGATGATCTTATAAAGATTTTGGACCCATGTCTTGTACCAAGAGATGCAGAAGTAGCAATACAAGATGGAGACAGTGAGAATCTTATCCTAAGTGTGACAGAGTGCTTAGTTTCACTTTTTAGGATTGGACTTATTTGCTCAATGGAATCCCTAAAGGAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTAGTATAATCAGGAAGACTTTTCTTGCCGGTGAGATAAACTGA 528 0.3939 PSNVLLDDDMVAHVSDFGIARLVSAIGGTSHKNTSTIGIKGTVGYAPPEYGMGAEVSKFGDMYSFGILVLEMLTGRRPTDEFFEDGQNLHNFVVNSFPDDLIKILDPCLVPRDAEVAIQDGDSENLILSVTECLVSLFRIGLICSMESLKERMNIVDVTRELSIIRKTFLAGEIN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12796g00001 175 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12796g00001 175 Pfam Protein kinase domain 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12796g00001 175 Gene3D Transferase(Phosphotransferase) domain 1 1 171 - -
Trme12796g00001 175 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 166 - -
Trme12796g00001 175 SUPERFAMILY Protein kinase-like (PK-like) 1 167 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12796g00001 Trme-Chr12796 57 697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12796g00001 1 170 Receptor kinase-like Gene Family AT3G47580 42.105 1.29e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme12796g00001 Pkinase 2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12796g00001 - - vvo:131635889 271.552