Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12768g00001 ATGGGTAGTGGTGCAAACTTAGCCATGGCTCAAGGACTATGTCGATATTTCTCTTTACAAGAGATGAGGCACGCAACCAATAATTTTGAAGAGTCCAATGTTATTGGGGTAGGAGGATTTGGAAAAGTTTACAAGGGTGTTATTGATAATGGTTTTAAAGTGGCTATTAAGAGATCAAATCCACAATCAGAACAAGGAGTGAATGAATTTCAGACGGAAATTGAGATGCTTTCAAAGCTTAGACATAAACATTTGGTGTCTTTAATTGGTTTTTGTGAGGAAGGTGAGGAAATGTGTTTGGTTTATGATTACATGGCCCATGGAACCATGAGGGAACATTTATACAAAGGAAACAAACCAATAGATACGTTATCATGGAAACAAAGGTTAGAGATTTGTATTGGTGCTGCAAGAGGTCTTCATTACCTTCACACAGGAGCAAAGTACACTATAATTCATAGAGATGTCAAAACAACCAACATTCTACTTGATGAAAATTTTGTTGCCAAGGTTTCAGATTTTGGTTTGTCAAAAACAGGTCCAGATATGAACCAGGGTCATGTTAGTACAGTAGTAAAAGGTAGTTTTGGTTATTTGGATCCTGAATATTTCAGGAGACAACAATTGACTGAAAAATCCGATGTTTACTCTTTCGGTGTTGTTCTATTCGAGGCATTGTGTTCAAGACCTGCTTTAAATCCTAGTCTTCCAAAGGAACAAGTTAGTCTTGCAGATTGGGCTTTGATGAACAAAAGAAAAGGAACATTGGAGGATATTATTGATCCAAATCTCAAAGGAAAAATCAAACCTGAAAGCTTGAATAAGTTTGCAGATACAGCTGAAAAGTGTTTGTCTGATTCTGGACTCGATCGTCCCTCGATGAATGATCTATTGTGGAATCTTGAATTTGCTCTCAACCTACAAGAAAACGATGGTACTTCAAGTTCAACTCATAACAACTCCGCACATATAGATGAGAGTGAATTTGAAGAGGTGAATTTGAATCAACGTAATGACATGGCAGCACATTACAAAAACCTTAGCCTTGGAAGTGAACATGACCTTAGTCATGACTCAGCTGGGAATTCTTCTGCCATTTTCTCTCAAATTGGCAATCCGAAAGGGCGATGA 1131 0.3767 MGSGANLAMAQGLCRYFSLQEMRHATNNFEESNVIGVGGFGKVYKGVIDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEGEEMCLVYDYMAHGTMREHLYKGNKPIDTLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENFVAKVSDFGLSKTGPDMNQGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCSRPALNPSLPKEQVSLADWALMNKRKGTLEDIIDPNLKGKIKPESLNKFADTAEKCLSDSGLDRPSMNDLLWNLEFALNLQENDGTSSSTHNNSAHIDESEFEEVNLNQRNDMAAHYKNLSLGSEHDLSHDSAGNSSAIFSQIGNPKGR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12768g00001 376 SMART serkin_6 29 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12768g00001 376 MobiDBLite consensus disorder prediction 353 370 - -
Trme12768g00001 376 ProSiteProfiles Protein kinase domain profile. 29 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12768g00001 376 CDD STKc_IRAK 35 302 - -
Trme12768g00001 376 Gene3D Transferase(Phosphotransferase) domain 1 105 330 - -
Trme12768g00001 376 SUPERFAMILY Protein kinase-like (PK-like) 10 304 IPR011009 -
Trme12768g00001 376 Gene3D Phosphorylase Kinase; domain 1 3 104 - -
Trme12768g00001 376 FunFam Receptor-like protein kinase FERONIA 105 322 - -
Trme12768g00001 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Trme12768g00001 376 FunFam receptor-like protein kinase FERONIA 2 104 - -
Trme12768g00001 376 MobiDBLite consensus disorder prediction 353 376 - -
Trme12768g00001 376 Pfam Protein tyrosine and serine/threonine kinase 32 298 IPR001245 GO:0004672|GO:0006468
Trme12768g00001 376 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524
Trme12768g00001 376 PANTHER OS07G0166700 PROTEIN 14 308 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12768g00001 Trme-Chr12768 109 1239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12768g00001 8 376 Receptor kinase-like Gene Family AT3G51550 66.319 9.02e-176 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme12768g00001 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12768g00001 - - gmx:100791236 639.032