Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12763g00001 ATGCGGTGTCTGTTGACAAAAAAGTTCATAAATTTAATAAAACAAGCAGAGGATGGTATTCTTGATCTAAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGTCTTATAGAGAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCAGGGGACGCTGATGATAGTTTTGCTAGTTTACAGGCGGAAATTGAAAATTTAACAATGGAGGAACGTCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAAACTACGGGATCTTAGTGAAGATGAAAATAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCTATTAAAGCTCCACATGGCACCACTTTGGAAGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAG 533 0.3921 MRCLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGDADDSFASLQAEIENLTMEERRLDEQIREMQEKLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12763g00001 177 CDD E2F_DD 73 177 IPR032198 GO:0046983
Trme12763g00001 177 SMART E2F_TDP_2 2 62 IPR003316 GO:0005667|GO:0006355
Trme12763g00001 177 Pfam E2F transcription factor CC-MB domain 78 177 IPR032198 GO:0046983
Trme12763g00001 177 Gene3D - 70 177 - -
Trme12763g00001 177 Coils Coil 13 33 - -
Trme12763g00001 177 Gene3D - 3 64 IPR036388 -
Trme12763g00001 177 Coils Coil 75 116 - -
Trme12763g00001 177 PANTHER TRANSCRIPTION FACTOR E2F 4 177 IPR015633 GO:0000978|GO:0006357
Trme12763g00001 177 Pfam E2F/DP family winged-helix DNA-binding domain 4 62 IPR003316 GO:0005667|GO:0006355
Trme12763g00001 177 SUPERFAMILY "Winged helix" DNA-binding domain 4 60 IPR036390 -
Trme12763g00001 177 SUPERFAMILY E2F-DP heterodimerization region 75 177 IPR037241 -
Trme12763g00001 177 FunFam E2F transcription factor 1 2 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12763g00001 Trme-Chr12763 25 1523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12763g00001 4 177 E2F-DP Transcription Factor Family AT5G22220 83.908 6.36e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trme12763g00001 E2F_CC-MB 5.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12763g00001 K06620 - gmx:100819817 330.487