Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12742g00001 ATAGATTTGACCTTCATTGGATCTCTTGAGATGCCTTCACCTGAACACTGTTCAGTTAGTTACAGTTGCATTAACTGGCTAGGAAAAATTGATCAGAAAAGACTGAGAGTTGAAATTCTGGATTTGGGTAGTTCTGCTGATCGAGCGAGAGATAATAAGTCACAAGCAGAAACCAAAGTAAAGGTTGAAAGTTCCTCCTTGAGGAGGTTGACGGAAATGAGTAATAAACGTACCAACTGTGTGCATGCATTGAAAAAATCTGGGGTTGAAAAAATTTCTGAAGCTTATAATTGGGTCGAAGCGCATCGCCATGAATTCAACAAGGAGGTGAATGTCCCTTATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTGGTACACTTGGAAGGTAGTCCWAGATATCTTCTTATGGTTTCTTTTGTTGCTGTAA 435 0.4 IDLTFIGSLEMPSPEHCSVSYSCINWLGKIDQKRLRVEILDLGSSADRARDNKSQAETKVKVESSSLRRLTEMSNKRTNCVHALKKSGVEKISEAYNWVEAHRHEFNKEVNVPYQSHAGYLEGQVAWYTWKVVXDIFLWFLLLL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12742g00001 144 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 33 131 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Trme12742g00001 144 SUPERFAMILY UBA-like 52 108 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12742g00001 Trme-Chr12742 1 807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12742g00001 35 131 Structural Maintenance of Chromosomes family AT5G15920 33.028 6.13e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12742g00001 K22803 - gmx:100778678 112.464