Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme127382g00001 ATGGCGGCAGTTTCATCACCTAAGACTATGATTCCAGCGGCTTTGAATGGCGGTACCGGAAGATTTGAGAATGCTTCTTTGTATGTTGGTGATCTTGAAGGGAACGTGAATGAGACTCAACTTTATGATCTGTTTGGTCAGATTGCTCAAGTGGTTTCCGTTAGGGTTTGTAGGGATCAGACCAAACAATCATCTCTTGGCTATGCTTATGTGAACTTC 219 0.4338 MAAVSSPKTMIPAALNGGTGRFENASLYVGDLEGNVNETQLYDLFGQIAQVVSVRVCRDQTKQSSLGYAYVNF 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme127382g00001 73 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 73 IPR000504 GO:0003723
Trme127382g00001 73 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 73 IPR000504 GO:0003723
Trme127382g00001 73 SUPERFAMILY RNA-binding domain, RBD 13 73 IPR035979 GO:0003676
Trme127382g00001 73 Gene3D - 20 73 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme127382g00001 Trme-Chr127382 387 605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme127382g00001 9 73 Eukaryotic Initiation Factors Gene Family AT4G34110 57.576 6.30e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme127382g00001 K13126 - mtr:120577873 107.457