Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12727g00001 ATGGATTCCATGGAAAAAACCTCAGAAAAGTGCTTAGATTCACAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTTTACTTTCCACAAGGTCATGCAGAACATGCTCATGGCAAAGTAGATTTCACAAAAACTCGTGTTCCACCACTCATTCCTTGTAGAATCTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNGATTTAGAAGAAGATTGTTTCTTTGGAAACAATGGTTTAGAGGGTCAAGAAAAACCAACTTCTTTTGCAAAAACATTGACACAATCTGATGCAAACAATGGTGGTGGTTTCTCTGTTCCTAGATACTGTGCTGAGACAATTTTTCCTAGATTGGATTACTCTGCAGAACCACCTGTTCAGACAATTATTGCTAAGGATATGCATGGACAGTGTTGGAAGTTTAGACATATTTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNAAGAAGAGCTAAGAAAGGTGGAATTGGTGGTGGAATAACTGATCAGTTTTCGAATTCTTCGAGTAATTGGAACCGTGTTTCGCCTTTGTTTGGTGGTGGTTCTGGTTTTTTGTGTGGAAATGAAAACAGAAAAAGTTGTGTTGGTGGTGATGATGATTTGATGAGAAGAGTTGGTTCTGAATCTGTTGTTGAAGCTGTGAATTGTGCTATTAATGGAAGATCTTTTGAAGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAAGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTTAAAATGCCATTTGAAACTGAAGATTCTTCTAGAATTAGTTGGTTTATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCATTGGCCTGATTCTCCTTGGCGTCTTCTTCAG 1080 0.3222 MDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFTKTRVPPLIPCRISXXXXXXXXXXXXXXXXXXXXXXXXXXXDLEEDCFFGNNGLEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAKKGGIGGGITDQFSNSSSNWNRVSPLFGGGSGFLCGNENRKSCVGGDDDLMRRVGSESVVEAVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIHWPDSPWRLLQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12727g00001 360 Coils Coil 213 214 - -
Trme12727g00001 360 Coils Coil 93 97 - -
Trme12727g00001 360 Gene3D - 112 188 IPR015300 -
Trme12727g00001 360 Pfam B3 DNA binding domain 114 184 IPR003340 GO:0003677
Trme12727g00001 360 CDD B3_DNA 113 183 IPR003340 GO:0003677
Trme12727g00001 360 SUPERFAMILY DNA-binding pseudobarrel domain 108 183 IPR015300 -
Trme12727g00001 360 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme12727g00001 360 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 184 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme12727g00001 360 Gene3D - 314 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12727g00001 Trme-Chr12727 1 1080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12727g00001 1 360 B3 DNA Binding Superfamily AT4G30080 54.620 1.39e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme12727g00001 Auxin_resp 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12727g00001 - - tpra:123919517 603.594