Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme127276g00001 ATGGTTACTCTGTCTGTATCTACAGGTTCCAACAAGGAGGATTCAAACAATATCGACCCACTGGCTCATCAAAAAGGTGCCGTTCTTATGGTATGCAGGACTTGTGGGAAAAAGGGTGACCATTGGACTTCAAGGTGTCCCTATAAGGATCTTGCACAACCTGCTGAGGGTTTTGTTGATAAACCTCCAGCATCAGATGNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGAGAGGACTACTGGTTCCGACATGAGGCGGAGGAATGATGAGAATTCTGTTCGGGTAACCAACCTCTCAGAAGACACAAGGGAACCTGATTTGCTTGAGCTGTTCCGGCCTTTTGGTACTGTCAGCAGGGTCTATGTTGCTATTGATCAAAAGACTGGCATGAGTAGGGGATTCGGCTTTGTCAACTTTGTAAGCAGGGAAGATGCTCAGAGGGCTATTAACAAACTCAATGGATATGGCTACGACAATCTCATCCTGAGAGTTGAATGGGCCACCCCAAGAACAACCTAA 552 0.413 MVTLSVSTGSNKEDSNNIDPLAHQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPAEGFVDKPPASDXXXXXXXXXXXXXXXXXXXXXERTTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGTVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme127276g00001 183 Coils Coil 88 90 - -
Trme127276g00001 183 SMART rrm1_1 103 176 IPR000504 GO:0003723
Trme127276g00001 183 FunFam Eukaryotic translation initiation factor 3 subunit G 80 183 - -
Trme127276g00001 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Trme127276g00001 183 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 90 179 - -
Trme127276g00001 183 Pfam Eukaryotic translation initiation factor 3 subunit G 10 51 IPR024675 -
Trme127276g00001 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 170 IPR000504 GO:0003723
Trme127276g00001 183 CDD RRM_eIF3G_like 103 178 IPR034240 -
Trme127276g00001 183 MobiDBLite consensus disorder prediction 85 108 - -
Trme127276g00001 183 MobiDBLite consensus disorder prediction 91 108 - -
Trme127276g00001 183 Gene3D - 78 183 IPR012677 -
Trme127276g00001 183 SUPERFAMILY RNA-binding domain, RBD 100 181 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme127276g00001 Trme-Chr127276 25 576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme127276g00001 26 183 Eukaryotic Initiation Factors Gene Family AT3G11400 71.605 3.83e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme127276g00001 K03248 - gmx:100818725 268.47