Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12722g00001 GAGAAGGATGAATTAATTGATTTCAAGATAATTACCGTTGATGAACCGCCGGTGAATTGTTTACATTTCTCGGTGCTTTCTGAAGCAAATGAAGATGAATTACCGCAGGTGCAATTCGATCCAGACGACGCAGTGTTGCTTCCGTTCTCTTCTGGAACAACAGGATTACCTAAAGGAGTGATTCTAACACATAAGAGCTTAATAACAAGCGTTGCTCAACAAGTTGATGGAGAGAATCCAAATATGTATTTAACAACAGAAGATGTTCTTCTTTGCGTTCTTCCNNNNNNNNTNNNNNNNNNNCTCAGCACTGTGCTATTGTGCGCACTGAGAGCAGGGAGTGCTGTTCTGTTAATGCATAAATTCGAGATTGGAACGTTGCTTGGTCTTATACAGAAACATAAAGTGACGGTGGTGATGGTTGTTCCACCACTAGTTTTGGCGTTAGCGAAGAATCCTACGGTGGAGGAGTTTGATCTTAGTTCGATACGGTTGGTGTTTTCTGGAGCTGCACCGTTACGGAAGGAGCTTGAGGAAATGCTTCATAACCGAATTCCTCAAGCTGTTTTGGGACAGGGATACGGTATGACAGAGGCAGGTCCAGTACTGTCCATGTCTTTGGGTTTTGCAAAGCATCCATTGCCAATAAGCTCAGGTTCATGTGGCACCGTTGTAAGAAATGCGGAACTCAAAATTTTTGACCCTGAAACTGGTCGTTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATCCGTGGTCAACAACTCATGAAAGGATATTTGAATGATGAGAATGCAACAAAAGCTACAATTGATAAAGAGGGCTGGCTTCATACTGGTGATATTGGATATGTTGATGACAATGATGAGATTTTMATCGTTGACAGGGTGAAGGAACTCATCAAATTCAAAGGCTTCCAAGTGCCCCCTGCTGAACTTGAAGGCCTTCTTGTAAGCCATCCATCAATTGCAGATGCCGCAGTCGTCCCGCAAAAAGATGTTGTTGCTGGTGAAGTTCCTGTTGCCTTTGTGGTAAGATCAAATGGATTTGATCTAACTGAAGAAGCTGTAAAGGACTTTATAGCTAAACAG 1092 0.4185 EKDELIDFKIITVDEPPVNCLHFSVLSEANEDELPQVQFDPDDAVLLPFSSGTTGLPKGVILTHKSLITSVAQQVDGENPNMYLTTEDVLLCVLPXXXXXXLSTVLLCALRAGSAVLLMHKFEIGTLLGLIQKHKVTVVMVVPPLVLALAKNPTVEEFDLSSIRLVFSGAAPLRKELEEMLHNRIPQAVLGQGYGMTEAGPVLSMSLGFAKHPLPISSGSCGTVVRNAELKIFDPETGRSLGYNQPGEICIRGQQLMKGYLNDENATKATIDKEGWLHTGDIGYVDDNDEIXIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVVAGEVPVAFVVRSNGFDLTEEAVKDFIAKQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12722g00001 364 Gene3D - 298 364 IPR045851 -
Trme12722g00001 364 Gene3D - 2 297 IPR042099 -
Trme12722g00001 364 Pfam AMP-binding enzyme 20 303 IPR000873 -
Trme12722g00001 364 SUPERFAMILY Acetyl-CoA synthetase-like 9 363 - -
Trme12722g00001 364 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 364 - -
Trme12722g00001 364 ProSitePatterns Putative AMP-binding domain signature. 47 58 IPR020845 -
Trme12722g00001 364 Pfam AMP-binding enzyme C-terminal domain 312 363 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12722g00001 Trme-Chr12722 97 1593 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12722g00001 17 364 Monolignol Biosynthesis Gene Families AT1G51680 63.818 6.42e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12722g00001 K01904 - gmx:547930 590.882