Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme127201g00001 TCATTTCAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGCGAAGCCGTGAGCAATATACGCACCGTTGCCGCATTTTGTTCTGAAGAAAAGATCCTTGATCTTTACGCTAACGAGCTCGTCGGTCCTTCCAAACATTCATTTCGACGTGGTCAAATTGCTGGCATATTCTATGGCATTTCGCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAGTTATGAAATCATTTATGGTTTTGATTGTAACGGCGCTTGCTATGGGGGAAACATTGGCACTAGCACCAGATCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTTGAAGTAATGGATAGAAAATCAGCAATATCAGGTGATAC 449 0.4098 SFQKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYANELVGPSKHSFRRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSAISGDT 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme127201g00001 150 Gene3D ABC transporter type 1, transmembrane domain 1 149 IPR036640 GO:0005524|GO:0016020
Trme127201g00001 150 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 128 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme127201g00001 150 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 13 144 IPR039421 -
Trme127201g00001 150 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 15 150 - -
Trme127201g00001 150 SUPERFAMILY ABC transporter transmembrane region 7 142 IPR036640 GO:0005524|GO:0016020
Trme127201g00001 150 Pfam ABC transporter transmembrane region 14 114 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme127201g00001 Trme-Chr127201 3 605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme127201g00001 20 150 Calmodulin-binding Proteins AT2G36910 25.191 1.81e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme127201g00001 K05658 - mnt:21400760 266.929