Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12707g00001 GCTGCAAAAGGCCTTGCATTTCTTCACAGTGCTGAAACAAAAGCGACATGCCGCGATTTCAAGACTTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTATCAAATTTTGGGCTGGCAAAGGGCGGGACTGCGGTTGATAAAAGTCATGTCTCCAACAAGCTAACCTACGGATATGCAGCTCCAGAATACCTAGCCACTGGTAATCACAGTGCTAAGAGTGAAGTCTATAGTTTTGGAGTTGTCCTCTTGGAAATATTATCAGGGAGGAGAGTTGTTGACAAGAATAGACCACAAAGACAACACAATTTGGTGGAATGGGCTAAGCCTTATCTATCCAACAAGCGCAAGATTTTGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNGTTGCTATACTCTCCCTACGGTGCCTTTCAATAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCCAAATGTAAATGGATGCAATCAGAATCGTTTACGTAGAAGAAGTGCCGATGATGTTCCCCGTGTTAGAACAGCTGCGGCTTATCCCCAACGCTCTACTTCTATGCTTTGTACATGA 624 0.3926 AAKGLAFLHSAETKATCRDFKTSNVLLDSNYNAKLSNFGLAKGGTAVDKSHVSNKLTYGYAAPEYLATGNHSAKSEVYSFGVVLLEILSGRRVVDKNRPQRQHNLVEWAKPYLSNKRKILXXXXXXXXXXXXXXXXXXVAILSLRCLSIEAKLRPNMDEVVTNLEQLQVPNVNGCNQNRLRRRSADDVPRVRTAAAYPQRSTSMLCT 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12707g00001 207 ProSiteProfiles Protein kinase domain profile. 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12707g00001 207 Gene3D Transferase(Phosphotransferase) domain 1 1 187 - -
Trme12707g00001 207 Pfam Protein kinase domain 2 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12707g00001 207 PANTHER OS01G0588500 PROTEIN-RELATED 1 168 - -
Trme12707g00001 207 SUPERFAMILY Protein kinase-like (PK-like) 2 170 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12707g00001 Trme-Chr12707 1 943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12707g00001 1 164 Glycoside Hydrolase AT3G07070 45.509 7.61e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme12707g00001 Pkinase 3.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12707g00001 - - gmx:100798404 259.61