Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme127050g00001 ATGGTTTACAAAGGAGTTCTAAGAGACGGTGTGAAGGTTGCTGTCAAGAGAGGCATGCCAGGATCAAGACAAGGCCTTCCAGAATTCCAAAGCGAAATAACAATTTTATCCAAAATTCGACATCGTCATCTTGTTTCGCTAGTTGGATTTTGCGAAGAAAATTCGGAAATGATACTCGTCTATGAGTATGTAGAAAAAGGTCCACTCAAAGATCTTTTATATGGTTCAGAAGGACTTCAACCTTTGTCGTGGAAGCAGCGTCTCGAGATATGCATCGGTGCAGCTCGAGGTCTACACTATCTTCACACCGGTTTTGCTCAAGGAATCATCCACCGCGACATTAAATCAACCAACATTTTGCTCGACGAAAATTATGTTGCTAAGGTTGCTGATTTTGGTCTTTCAAGATCCGGACCTTGTATCAATGAAACTCATGTGAGTACTAATGTGAAAGGTAGTTTCGGTTATCTTGATCCGGAGTATTTTCGAAGGCAACAACTTACGGATAAATCAGATGTTTATTCCTTCGGCGTTGTTCTTTTCGAG 546 0.4121 MVYKGVLRDGVKVAVKRGMPGSRQGLPEFQSEITILSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKDLLYGSEGLQPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCINETHVSTNVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme127050g00001 182 Gene3D Phosphorylase Kinase; domain 1 1 64 - -
Trme127050g00001 182 Pfam Protein tyrosine and serine/threonine kinase 2 182 IPR001245 GO:0004672|GO:0006468
Trme127050g00001 182 PANTHER OS07G0166700 PROTEIN 2 182 IPR045272 GO:0004714|GO:0006468
Trme127050g00001 182 SMART serkin_6 2 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme127050g00001 182 FunFam Os07g0541700 protein 64 153 - -
Trme127050g00001 182 SUPERFAMILY Protein kinase-like (PK-like) 2 182 IPR011009 -
Trme127050g00001 182 FunFam receptor-like protein kinase FERONIA 1 63 - -
Trme127050g00001 182 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme127050g00001 182 Gene3D Transferase(Phosphotransferase) domain 1 65 182 - -
Trme127050g00001 182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme127050g00001 Trme-Chr127050 16 561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme127050g00001 2 182 Receptor kinase-like Gene Family AT3G46290 75.691 4.44e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme127050g00001 PK_Tyr_Ser-Thr 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme127050g00001 - - psat:127128324 350.903