Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12685g00001 GAGACATTCAAAGATGATCTACACAAGGTTGATGGGTGGAAGAGAGCTATGACCTGTTTCGCTGGATTAGCTGGTTGTGATGTCAGGGATAAGTTGGAGGTTGGAGTGATTGAAACAATTGTTCAAGATGTAATAAAAAAATTGGATCATAAGTTCCCAGGGCTTTCTAACGATCTTATTGGATTGCAACCTCGTGTCGAAGCATTAGAAAGACTTTTAAATCCAAAGTCAGAGGACGATGCTTATCGAGTATTAGGAATATGGGGGATGGATGGCATAGGAAAAACAACTCTTGCAAATGTCTTGTATGATAAACTCTCATATCAATTTGACGCTGGTTGTTTTATTGAGAATGTTAGCACAATTTATAGGGATGGTGGTGCTATTGCTGTCAAGAAACAAATTCTTCATCAAACTCTAAAAGAAAAAGATCTAGAAACATACAGTACTTATAGGCTAAACAACATAAAGTTCCTTATAGTTCTTGATGACATTGATCAATTTGAGCTACTAGAAAAATTGGACATAAATCCCAAATTGCTTCATCCAGGAAGTAGAATAATCATAACCACTAGAGATAGGCATATTCTTGAATTGTATGGAGTGATTCAAATTCACGAGGTTGAATTGATGAATGGTAATGATTCTTGGGAACTTCTATGTAGAAAAGCCTTTAAAAATGATAATTCAAGTGGTCATGCAGAACTTATTCCTAAGGTACTAGAATACACTCAAGGTCTTCCATTAGCAATTAGAGTAATGGGTTCGTTCTTGTATCAGAGACCTACCACTCAATGGAGAGCTACCTTGGAAAGATTGAAGAATAATCCAAATAGTGGAATTATGAAAGTGCTTCAGTCAAGTTTCGAGGGACTCGATGACATAGAGAAAGAAATATTTTTGCACGTTGCTTGTTTCTTTCAAGGGGAGAGGGAGGATTATGTGAGGTGA 951 0.367 ETFKDDLHKVDGWKRAMTCFAGLAGCDVRDKLEVGVIETIVQDVIKKLDHKFPGLSNDLIGLQPRVEALERLLNPKSEDDAYRVLGIWGMDGIGKTTLANVLYDKLSYQFDAGCFIENVSTIYRDGGAIAVKKQILHQTLKEKDLETYSTYRLNNIKFLIVLDDIDQFELLEKLDINPKLLHPGSRIIITTRDRHILELYGVIQIHEVELMNGNDSWELLCRKAFKNDNSSGHAELIPKVLEYTQGLPLAIRVMGSFLYQRPTTQWRATLERLKNNPNSGIMKVLQSSFEGLDDIEKEIFLHVACFFQGEREDYVR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12685g00001 316 Gene3D - 211 293 IPR042197 -
Trme12685g00001 316 Pfam NB-ARC domain 70 291 IPR002182 GO:0043531
Trme12685g00001 316 PRINTS Disease resistance protein signature 152 166 - -
Trme12685g00001 316 PRINTS Disease resistance protein signature 84 99 - -
Trme12685g00001 316 PRINTS Disease resistance protein signature 244 258 - -
Trme12685g00001 316 Gene3D - 42 205 IPR027417 -
Trme12685g00001 316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 302 IPR027417 -
Trme12685g00001 316 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 307 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12685g00001 Trme-Chr12685 1 1197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12685g00001 60 315 WRKY Transcription Factor Family AT5G45050 36.122 2.57e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12685g00001 - - vvo:131641228 401.364