Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1267932g00001 ATGCAAATCTTCGTCAAAACCCTAACAGGCAAAACCATCACACTCGAAGTCGAATCCTCCGACACGATCGACAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTATAATATCCAGAAAGAGTCTACGCTTCATTT 206 0.4466 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1267932g00001 68 PRINTS Ubiquitin signature 53 68 IPR019956 -
Trme1267932g00001 68 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trme1267932g00001 68 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme1267932g00001 68 ProSiteProfiles Ubiquitin domain profile. 1 68 IPR000626 GO:0005515
Trme1267932g00001 68 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trme1267932g00001 68 SMART ubq_7 1 68 IPR000626 GO:0005515
Trme1267932g00001 68 FunFam Polyubiquitin 1 68 - -
Trme1267932g00001 68 Pfam Ubiquitin family 3 68 IPR000626 GO:0005515
Trme1267932g00001 68 Gene3D - 1 68 - -
Trme1267932g00001 68 SUPERFAMILY Ubiquitin-like 1 68 IPR029071 -
Trme1267932g00001 68 PANTHER UBIQUITIN 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1267932g00001 Trme-Chr1267932 4 209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1267932g00001 1 68 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.31e-45 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1267932g00001 - K08770 gmx:100527854 135.961