Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12674g00001 ATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGGTCTTTATGCTGATGAGCTTGTTGAGCCTTCCAAACGATCATTCAGACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCATAGCCTTGTGGAGTGTTCAGTGTCCAACACTGGCAGACACCGACACATGTGGCACATCTAATAATTCCTTTTTCTTGGATTATTACCGGTGTCGACATGTTAGTGTCTATGAAGTGCTGACACACGCTGGCCACGACACTGTGTCACTGTTACCGATTTTCCCGTCTCAGTCACTGTTTGATAGTTTCCTTTGTTTTGGGACTTATATATATACACCTTTTACAGCATTGGCTATGGGGGAAACTTTGGCACTTGCACCAGACCTTTTGAAAGGGAATCAAATGGTTTCATCAATTTTTGATATGATAGATAGAAAGTCAGGAATAATGTATAATGTTGGAGAAGAATTGATGACAGTGGAAGGAACAATTGAGCTAAGAAGGATCAATTTTAGCTACCCTTCAAGACCAAACATTGTTATTTTTAATGATTTCAATCTAATAGTTCCTTCAGGGAAGAGTCTTGCCTTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAATAATCTCACTTATACTTAGATTTTATGATCCTACATCTGGGAAGGTGATGATTGATGGTTGCGGTTACACTGCGAATTTTGATACCGCGGATGAAATAGTTGCAGCTGCGATTGCGGTTGCGATCAATGTTGGATATATGGAGGACCACAGTTCGATCCCCCGCAACTGCGATCAGGAGAGGGCTGGAACCACTGGATGCCAGAACTGA 939 0.4164 MQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYADELVEPSKRSFRRGQIAGIFYGISQFFIFSSYGIALWSVQCPTLADTDTCGTSNNSFFLDYYRCRHVSVYEVLTHAGHDTVSLLPIFPSQSLFDSFLCFGTYIYTPFTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIMYNVGEELMTVEGTIELRRINFSYPSRPNIVIFNDFNLIVPSGKSLALVGQSGSGKSSIISLILRFYDPTSGKVMIDGCGYTANFDTADEIVAAAIAVAINVGYMEDHSSIPRNCDQERAGTTGCQN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12674g00001 312 Gene3D - 190 263 IPR027417 -
Trme12674g00001 312 SUPERFAMILY ABC transporter transmembrane region 7 81 IPR036640 GO:0005524|GO:0016020
Trme12674g00001 312 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 80 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme12674g00001 312 Pfam ABC transporter 219 264 IPR003439 GO:0005524
Trme12674g00001 312 Gene3D ABC transporter type 1, transmembrane domain 9 87 IPR036640 GO:0005524|GO:0016020
Trme12674g00001 312 Gene3D ABC transporter type 1, transmembrane domain 150 189 IPR036640 GO:0005524|GO:0016020
Trme12674g00001 312 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 9 264 IPR039421 -
Trme12674g00001 312 Pfam ABC transporter transmembrane region 8 80 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme12674g00001 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12674g00001 Trme-Chr12674 35 1562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12674g00001 1 263 Calmodulin-binding Proteins AT2G36910 39.850 1.72e-53 186