Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12673g00001 ATGGCGGAATCTTCATCTTCTCCCGCAACGCTAAAACCCAATCCTCAGTCCAATTCCGAACCACGAAGAGGTCATGGACGAAGGGTCTTCATGCTTGAAACATTAGACAACAATACACCTATTTCGAAGCTTGGTGAAGGCAGTTTCGGTCAAGTTTTTCAATGCCGAAATGTTAAAGATAACACCATTGTTGCTGTGAAACAGATCAGCATTAAAAGAAATTTCGATGGTGTTCCTGCTGATATTATAAGAGAGGTCTCCCATTTGAAAGAGTTGAAGCATCCAAACATTGTTAGATCGTCTGCAGTGGACTACTGCAATACTCACAATGTTATTCATCTAGATTTGAAACCCATCAATCTTCTGATCGATCGCTCTAAGAAGATAATCAAGCTTACTGATTTTGGTTTTTGTAAAGAGTTGGGAGATCCTGACATGCAATATTCTACAAATATAGCAACTCCGTGGTATACAACACCTGAAATGTTGTTTGGCGGCGGTCGATATTCAACACTATCGAATAAGAAATAG 531 0.3974 MAESSSSPATLKPNPQSNSEPRRGHGRRVFMLETLDNNTPISKLGEGSFGQVFQCRNVKDNTIVAVKQISIKRNFDGVPADIIREVSHLKELKHPNIVRSSAVDYCNTHNVIHLDLKPINLLIDRSKKIIKLTDFGFCKELGDPDMQYSTNIATPWYTTPEMLFGGGRYSTLSNKK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12673g00001 176 MobiDBLite consensus disorder prediction 1 20 - -
Trme12673g00001 176 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Trme12673g00001 176 PANTHER CELL DIVISION PROTEIN KINASE 101 171 - -
Trme12673g00001 176 Pfam Protein kinase domain 41 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12673g00001 176 Pfam Protein kinase domain 101 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12673g00001 176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Trme12673g00001 176 Gene3D Transferase(Phosphotransferase) domain 1 36 101 - -
Trme12673g00001 176 Gene3D Transferase(Phosphotransferase) domain 1 102 174 - -
Trme12673g00001 176 SMART serkin_6 38 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12673g00001 176 SUPERFAMILY Protein kinase-like (PK-like) 32 171 IPR011009 -
Trme12673g00001 176 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme12673g00001 176 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12673g00001 35 171 Core Cell Cycle Gene Families AT3G48750 31.694 3.11e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trme12673g00001 Pkinase 3.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12673g00001 - - vvo:131617029 148.288