Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme126641g00001 ATGCCAGACATGGATGGCTGTAAACTCCTTGAACATGTTGGGTTGGAGATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTTATTAAGCCTGTACGGTTGGAAGAACTTAGGAATATATGGCAGCATGTTGCTAGGAAATTTTTGAATGAAAGTAAAGAACATGATAATTCTGGCAGCAGAGAAGATAATGATCGCAATAAACGGGGGAATGATGATAACAATAACATTTCTTCTGCTGCTGGTGCAACAAAAGGAATAGTTAAAGAACAAAAAAAGAGAAGCAATTTAAAAGATGGAGAAGATGTTGAATTGGAGAATGATGATCCATCTACATCTAAGAAGCCTCGTGTAGTATG 410 0.3756 MPDMDGCKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELRNIWQHVARKFLNESKEHDNSGSREDNDRNKRGNDDNNNISSAAGATKGIVKEQKKRSNLKDGEDVELENDDPSTSKKPRVV 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme126641g00001 136 MobiDBLite consensus disorder prediction 66 89 - -
Trme126641g00001 136 Pfam Response regulator receiver domain 1 57 IPR001789 GO:0000160
Trme126641g00001 136 MobiDBLite consensus disorder prediction 66 136 - -
Trme126641g00001 136 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
Trme126641g00001 136 MobiDBLite consensus disorder prediction 104 136 - -
Trme126641g00001 136 Gene3D - 1 126 - -
Trme126641g00001 136 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 136 IPR045279 GO:0009736
Trme126641g00001 136 SUPERFAMILY CheY-like 1 68 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme126641g00001 Trme-Chr126641 43 546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme126641g00001 1 136 Response Regulator Gene Family AT4G16110 51.773 7.56e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme126641g00001 Response_reg 2e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme126641g00001 - K14491 qsu:112039688 193.741