Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme126569g00001 ATGCGGGATATTGCAGAGGAATATTTAGAATCACCGGTTAAAAATGCAGTTATCACTGTCCCTGCTTATTTCAATGATTCTCAGCGAAAAGCCACAGTTGATGCTGGTTTCATTGCTGGGCTTAATGTTTTGCGGATAATCAATGAACCTACTGCTGCGGCTATTGCATATGGCCTTGACAAGAGANNNNNNNNNNANNNNNNNNNNANNNTTTTTGTCTTTGACCTTGGTGGTGGGACTTTTGATGTTTCTCTCCTTACAATTAAGGGTAAGGTCTTTGAAGTTAAGGCCACTTCTGGGAACACTCACCTAGGAGGAGAGGACTTTGATAATAGAATGGTGAACTACTTCGCAAAGGAGTTCGAGAGGAAGCATAAGAAGGATATTAGTGAGAACCCAAGAGCCTTGAGGAGGTTGAGAACTGCGTGCGAGAAGGCAAAGCGGGCACTCTCTTTTTCTTCTGTGGCTGTGGTTGAGGTAGATTCTTTGTATGAGGGAATTGACTTCTTCTCATCAATCACTCGTGCCAAGTTTGAGGAAATCAATATGGACTTTTTTAAAGAGTGCATGAGGATTGTTG 580 0.4086 MRDIAEEYLESPVKNAVITVPAYFNDSQRKATVDAGFIAGLNVLRIINEPTAAAIAYGLDKRXXXXXXXXXFVFDLGGGTFDVSLLTIKGKVFEVKATSGNTHLGGEDFDNRMVNYFAKEFERKHKKDISENPRALRRLRTACEKAKRALSFSSVAVVEVDSLYEGIDFFSSITRAKFEEINMDFFKECMRIV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme126569g00001 193 Gene3D - 1 93 - -
Trme126569g00001 193 Pfam Hsp70 protein 1 191 IPR013126 GO:0005524|GO:0140662
Trme126569g00001 193 FunFam Endoplasmic reticulum chaperone BiP 1 70 - -
Trme126569g00001 193 FunFam Heat shock 70 kDa 105 188 - -
Trme126569g00001 193 ProSitePatterns Heat shock hsp70 proteins family signature 2. 73 86 IPR018181 -
Trme126569g00001 193 Gene3D Actin; Chain A, domain 4 105 188 - -
Trme126569g00001 193 SUPERFAMILY Actin-like ATPase domain 1 61 IPR043129 -
Trme126569g00001 193 PRINTS 70kDa heat shock protein signature 16 36 - -
Trme126569g00001 193 PRINTS 70kDa heat shock protein signature 79 89 - -
Trme126569g00001 193 SUPERFAMILY Actin-like ATPase domain 72 192 IPR043129 -
Trme126569g00001 193 PANTHER HEAT SHOCK PROTEIN 70KDA 1 193 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme126569g00001 Trme-Chr126569 28 607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme126569g00001 1 193 Calmodulin-binding Proteins AT5G02500 70.984 7.75e-100 296