Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1264g00001 ATGTCTAAATGTAGGATGCAGAGAAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCCAATGGTTGGGGTACAGACCAGGATTCTGGGCAGGATGACAGTCAATCAGAAACCTCTTGCACACATTGTGGCACAAGTTCAAAATCGACCCCGATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTATTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGACATCATGAACTATCTATTGTACCAGCCGAGCAGGTTGATCAAGGTAATAGCTCAGACTGTGGAACAGCAACTATCCCTTCACACAATAATCTTGCTGCTTTCTCCGAGAATAATAACCAAGCTTTGGTAGCTGATCGTTAA 396 0.4495 MSKCRMQRNKGQFTSSKKQDGANGWGTDQDSGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLYWANRGALRDLSKRHHELSIVPAEQVDQGNSSDCGTATIPSHNNLAAFSENNNQALVADR 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1264g00001 131 ProSitePatterns GATA-type zinc finger domain. 42 69 IPR000679 GO:0006355|GO:0043565
Trme1264g00001 131 SMART GATA_3 36 89 IPR000679 GO:0006355|GO:0043565
Trme1264g00001 131 Pfam GATA zinc finger 42 77 IPR000679 GO:0006355|GO:0043565
Trme1264g00001 131 MobiDBLite consensus disorder prediction 1 61 - -
Trme1264g00001 131 ProSiteProfiles GATA-type zinc finger domain profile. 36 95 IPR000679 GO:0006355|GO:0043565
Trme1264g00001 131 PANTHER GATA TRANSCRIPTION FACTOR 28 5 104 IPR045280 GO:0006355
Trme1264g00001 131 MobiDBLite consensus disorder prediction 1 55 - -
Trme1264g00001 131 CDD ZnF_GATA 41 85 IPR000679 GO:0006355|GO:0043565
Trme1264g00001 131 Gene3D - 32 91 IPR013088 GO:0006355|GO:0008270
Trme1264g00001 131 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 38 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1264g00001 Trme-Chr1264 488 1865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1264g00001 4 130 Tify Gene Family AT4G24470 51.773 1.60e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme1264g00001 GATA 5.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1264g00001 - - gmx:100810269 208.764