Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme126475g00001 ATGGCGGAAGAGCACCGATGTGAAACACCAGAAGGTCACATACTCTGCGCTAACAACTGCGGCTTCTTCGGTAGTTCAGCTACGATGAATCTCTGTTCAAAATGTTACAGAGATATTCATTTGAAGGAACAAGAACAAGCCAAAACCAAATCAACAATCGAAACCGCTCTCTCCTCAGCCTCCGCTTCAACCGCCGTGGTTGTTGCTTCTCCGGTTCCGGAAATCGAATCTCTCCCTCAACAACCGGCGTTGACTATACCTTCGATCGTGCCTGATGAATCGGATTCATCGATTGGATCGGTTCAACCGAACCGGTGTGGAACGTGTAGGAAGCGGGTCGGGTTAACCGGATTCAAGTGTAGATGTGGAATCACGTTTTGTGGGACCCACAGGTATCCGGAGAAACACGAGTGTGGTTACGATTTCAAAGCGGTGGGGCGAGACGAGATAGCGAAAGCGAATCCCGTGATCAAAGCCGATAAGCTGAGAAGAATTTGA 498 0.492 MAEEHRCETPEGHILCANNCGFFGSSATMNLCSKCYRDIHLKEQEQAKTKSTIETALSSASASTAVVVASPVPEIESLPQQPALTIPSIVPDESDSSIGSVQPNRCGTCRKRVGLTGFKCRCGITFCGTHRYPEKHECGYDFKAVGRDEIAKANPVIKADKLRRI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme126475g00001 165 PANTHER AN1-TYPE ZINC FINGER PROTEIN 12 165 - -
Trme126475g00001 165 SUPERFAMILY AN1-like Zinc finger 92 160 IPR035896 -
Trme126475g00001 165 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Trme126475g00001 165 Gene3D - 85 161 IPR035896 -
Trme126475g00001 165 Gene3D - 1 63 - -
Trme126475g00001 165 FunFam Zinc finger AN1-type containing 6 84 161 - -
Trme126475g00001 165 Pfam AN1-like Zinc finger 106 142 IPR000058 GO:0008270
Trme126475g00001 165 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Trme126475g00001 165 ProSiteProfiles Zinc finger AN1-type profile. 100 146 IPR000058 GO:0008270
Trme126475g00001 165 SMART AN1_Zf_4 106 143 IPR000058 GO:0008270
Trme126475g00001 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 62 - -
Trme126475g00001 165 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme126475g00001 Trme-Chr126475 58 555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme126475g00001 1 165 C2H2 Transcription Factor Family AT3G52800 51.136 3.05e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme126475g00001 - - gmx:100789686 239.965