Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme126121g00001 CACAAATACGAAATAGTAAGAAGGCTTCAAGAGAGGAAGCACATATGTGGCATGACAGGTGATGGTGTGAACGACGCACCAGCGTTGAAGAGAGCTGATATCGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGATATTGTCCTAACTGAACCTGGTTTGAGTGTAATTATCAGTGCTGTGCTCACCAGCAGGGCCATTTTCCAAAGAATGAAAAACTATACTATTTATGCTGTGTCCATCACAATCCGAATTGTG 270 0.4333 HKYEIVRRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme126121g00001 90 PRINTS H+-transporting ATPase (proton pump) signature 50 75 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme126121g00001 90 PRINTS H+-transporting ATPase (proton pump) signature 19 35 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme126121g00001 90 SUPERFAMILY HAD-like 1 87 IPR036412 -
Trme126121g00001 90 Gene3D - 57 90 - -
Trme126121g00001 90 PRINTS P-type cation-transporting ATPase superfamily signature 19 38 - -
Trme126121g00001 90 PRINTS P-type cation-transporting ATPase superfamily signature 42 54 - -
Trme126121g00001 90 FunFam Plasma membrane ATPase 1 67 - -
Trme126121g00001 90 NCBIfam HAD-IC family P-type ATPase 1 87 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme126121g00001 90 Pfam haloacid dehalogenase-like hydrolase 2 33 - -
Trme126121g00001 90 PANTHER CALCIUM-TRANSPORTING ATPASE 1 90 - -
Trme126121g00001 90 Gene3D - 1 56 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme126121g00001 Trme-Chr126121 205 563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme126121g00001 1 90 Primary Pumps ATPases AT1G80660 96.667 2.54e-54 178